Publications

Gupta A., Shukla A., Srivas M., Thattai M.  2018.  SMT Solving for Vesicle Traffic Systems in Cells. ArXiv e-prints.

A. Vishen S, Rupprecht J.-F., Shivashankar G.V, Prost J., Rao M.  2018.  Soft inclusion in a confined fluctuating active gel. Physical Review EPhys. Rev. E. 97(3):032602-.

Chib S, Das S, Venkatesan S, Seshasayee ASai Narain, Thattai M.  2018.  Using stochastic cell division and death to probe minimal units of cellular replication. New Journal of Physics. 20(3):035004.

Banerjee DSankar, Munjal A, Lecuit T, Rao M.  2017.  Actomyosin pulsation and flows in an active elastomer with turnover and network remodeling. Nature Communications. 8:1121:1-13.

Thutupalli S, Geyer D, Singh R, Adhikari R, Stone H.  2017.  Boundaries determine the collective dynamics of self-propelled particles. arXiv:1710.10300 [cond-mat.soft].

Morris R, Rao M.  2017.  Covariant Active Hydrodynamics of Epithelial Tissue Morphology. arXiv:1710.09110 [cond-mat.soft].

Shukla A, Bhattacharyya A, Kuppusamy L, Srivas M, Thattai M.  2017.  Discovering vesicle traffic network constraints by model checking.. PLoS One. 12(7):e0180692.

Goyal A, Maslov S.  2017.  Diversity, stability, and reproducibility in stochastically assembled microbial ecosystems. arXiv:1711.00755 [q-bio.PE].

Taylor MJ, Husain K, Gartner ZJ, Mayor S, Vale RD.  2017.  A DNA-Based T Cell Receptor Reveals a Role for Receptor Clustering in Ligand Discrimination. Cell. 169(1):108-119.

Husain K, Rao M.  2017.  Emergent Structures in an Active Polar Fluid: Dynamics of Shape, Scattering, and Merger. Physical Review Letters. 118(7):078104-1:5.

Suratekar R, Raghu P, Krishna S.  2017.  Evidence of sinks and sources in the PLC activated PIP₂ cycle. bioRxiv.

Mandalaparthy V, Sanaboyana VRamana, Rafalia H, Gosavi S.  2017.  Exploring the effects of sparse restraints on protein structure prediction. Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and BioinformaticsProteins. 86(2):248-262.

Thutupalli S, Uppaluri S, Constable GWA, Levin SA, Stone HA, Tarnita CE, Brangwynne CP.  2017.  Farming and public goods production in Caenorhabditis elegans populations. Proceedings of the National Academy of Sciences. 114(9):2289-2294.

Mandal R, Bhuyan PJyoti, Chaudhuri P, Rao M, Dasgupta C.  2017.  Glassy swirls of active dumbbells. Physical Review E. 96(4)

Sinha V., Goyal A., Svenningsen S.L, Semsey S., Krishna S..  2017.  In silico Evolution of Lysis-Lysogeny Strategies Reproduces Observed Lysogeny Propensities in Temperate Bacteriophages. Frontiers in Microbiology. 8:1386.

Hossein S.R, Mandal R., Rao M..  2017.  {Interacting passive advective scalars in an active medium}. ArXiv e-prints.

Rupprecht J-F, Singh A, Shivashankar G.V, Rao M, Prost J.  2017.  Maximal fluctuations of confined actomyosin gels: dynamics of the cell nucleus. arXiv:1703.04395 [physics.bio-ph].

Liu G, Patch A, Bahar F, Yllanes D, Welch RD, M. Marchetti C, Thutupalli S, Shaevitz JW.  2017.  A motility-induced phase transition drives Myxococcus xanthus aggregation. arXiv:1709.06012 [physics.bio-ph].

Thattai M.  2017.  Organelle acidification: an ancient cellular leak detector.. BMC Biol. 15(1):51.

Singh A, Rupprecht J-F, Shivashankar G.V, Prost J, Rao M.  2017.  Soft inclusion in a confined fluctuating active fluid. arXiv:1703.04401 [physics.bio-ph].

Das SG, Rao M, Iyengar G.  2017.  Universal lower bound on the free-energy cost of molecular measurements. Physical Review E. 95(6):062410-1:8.

Mandal R, Bhuyan PJyoti, Rao M, Dasgupta C.  2016.  Active fluidization in dense glassy systems. Soft Matter. 12:6268-6276.

Dey G, Thattai M, Baum B.  2016.  On the Archaeal Origins of Eukaryotes and the Challenges of Inferring Phenotype from Genotype. Trends in Cell Biology. 26:476–485.

Sachdeva H, Barma M, Rao M.  2016.  Nonequilibrium mechanisms underlying de novo biogenesis of Golgi cisternae.

Gowrishankar K, Rao M.  2016.  Nonequilibrium phase transitions, fluctuations and correlations in an active contractile polar fluid. Soft matter. 12:2040–2046.