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2022
Mani S, Krishnan K, Thattai M.  2022.  Graph-theoretic constraints on vesicle traffic networks.. J Biosci. 47
Baranov MV, Ioannidis M, Balahsioui S, Boersma A, de Boer R, Kumar M, Niwa M, Hirayama T, Zhou Q, Hopkins TM et al..  2022.  Irregular particle morphology and membrane rupture facilitate ion gradients in the lumen of phagosomes.. Biophys Rep (N Y). 2(3):100069.
Yadahalli S, Jayanthi LP, Gosavi S.  2022.  A Method for Assessing the Robustness of Protein Structures by Randomizing Packing Interactions.. Front Mol Biosci. 9:849272.
Jain I, Rao M, Tran PT.  2022.  Optimal reliability, robustness and control of nucleus centering in fission yeast is contingent on nonequilibrium force patterning. bioRxiv. :2022–06.
Tripathy M, Srivastava A, Sastry S, Rao M.  2022.  Protein as evolvable functionally constrained amorphous matter. Journal of Biosciences. 47:73.
Prabhakara C, Iyer KSwaminatha, Rao M, Saunders TE, Mayor S.  2022.  Quantitative analysis of three-dimensional cell organisation and concentration profiles within curved epithelial tissues. BioRxiv. :2022–05.
Husain K, Ramaswamy S, Rao M.  2022.  Robust Molecular Computation by Active Mechanics. arXiv preprint arXiv:2204.04838.
Chimthanawala A, Parmar JJ, Kumar S, Iyer KS, Rao M, Badrinarayanan A.  2022.  SMC protein RecN drives RecA filament translocation for in vivo homology search.. Proc Natl Acad Sci U S A. 119(46):e2209304119.
Banerjee JPrasad, Mandal R, Banerjee DSankar, Thutupalli S, Rao M.  2022.  Unjamming and emergent nonreciprocity in active ploughing through a compressible viscoelastic fluid.. Nat Commun. 13(1):4533.
2021
Hao N, Agnew D, Krishna S, Dodd IB, Shearwin KE.  2021.  Analysis of Infection Time Courses Shows CII Levels Determine the Frequency of Lysogeny in Phage 186.. Pharmaceuticals (Basel). 14(10):14(10),998.
Varahan S, Sinha V, Walvekar A, Krishna S, Laxman S.  2021.  Correction: Resource plasticity-driven carbon-nitrogen budgeting enables specialization and division of labor in a clonal community.. eLife. 10(e74046)
Lall S, Balaram P, Gosavi S, Mathew MK.  2021.  Dynamics and self-assembly of the SARS-CoV-2 spike transmembrane domain. bioRxiv. :2021–06.
Pothukuchi P, Agliarulo I, Pirozzi M, Rizzo R, Russo D, Turacchio G, Nüchel J, Yang J-S, Gehin C, Capolupo L et al..  2021.  GRASP55 regulates intra-Golgi localization of glycosylation enzymes to control glycosphingolipid biosynthesis.. EMBO J. 40(20):e107766.
Samhita L, Raval PK, Stephenson G, Thutupalli S, Agashe D.  2021.  The impact of mistranslation on phenotypic variability and fitness. Evolution. 75:1201–1217.
Terse VL, Gosavi S.  2021.  The Molecular Mechanism of Domain Swapping of the C-Terminal Domain of the SARS-Coronavirus Main Protease.. Biophys J. 120(3):504-516.
Charlat S, Ariew A, Bourrat P, Ruiz MFerreira, Heams T, Huneman P, Krishna S, Lachmann M, Lartillot N, d'Hendecourt LLe Sergean et al..  2021.  Natural Selection beyond Life? A Workshop Report. Life (Basel). 11(10):11(10),1051.
Cherian P, Krishna S, Menon GI.  2021.  Optimizing testing for COVID-19 in India.. PLoS Comput Biol. 17(7):e1009126.
Yang X, Heinemann M, Howard J, Huber G, Iyer-Biswas S, Le Treut G, Lynch M, Montooth KL, Needleman DJ, Pigolotti S et al..  2021.  Physical bioenergetics: Energy fluxes, budgets, and constraints in cells.. Proc Natl Acad Sci U S A. 118(26)
Sathe M, Muthukrishnan G, Rae J, Disanza A, Thattai M, Scita G, Parton RG, Mayor S.  2021.  Publisher Correction: Small GTPases and BAR domain proteins regulate branched actin polymerisation for clathrin and dynamin-independent endocytosis.. Nat Commun. 12(1):5158.
Das A, Yadav A, Gupta M, R P, Terse VL, Vishvakarma V, Singh S, Nandi T, Banerjee A, Mandal K et al..  2021.  Rational Design of Protein-Specific Folding Modifiers.. J Am Chem Soc. 143(44):18766-18776.
Das A, Yadav A, Gupta M, Terse VL, Vishvakarma V, Singh S, Nandi T, Banerjee A, Mandal K, Gosavi S et al..  2021.  Rational design of protein-specific folding modifiers. Journal of the American Chemical Society. 143:18766–18776.
Jeancolas C, Matsubara YJ, Vybornyi M, Lambert CN, Blokhuis A, Alline T, Griffiths AD, Ameta S, Krishna S, Nghe P.  2021.  RNA diversification by a self-reproducing ribozyme revealed by deep sequencing and kinetic modelling.. Chem Commun (Camb). 57(61):7517-7520.
Ameta S, Matsubara YJ, Chakraborty N, Krishna S, Thutupalli S.  2021.  Self-Reproduction and Darwinian Evolution in Autocatalytic Chemical Reaction Systems.. Life (Basel). 11(4):11(4),208.
Hossein SRaj, Mandal R, Rao M.  2021.  Stratification, multivalency and turnover of the active cortical machinery are required for steady active contractile flows at the cell surface. arXiv preprint arXiv:2105.11358.
Heltberg ML, Krishna S, Kadanoff LP, Jensen MH.  2021.  A tale of two rhythms: Locked clocks and chaos in biology.. Cell Syst. 12(4):291-303.
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