Publications

Suratekar R, Raghu P, Krishna S.  2017.  Evidence of sinks and sources in the PLC activated PIP₂ cycle. bioRxiv.

Mandalaparthy V, Sanaboyana VRamana, Rafalia H, Gosavi S.  2017.  Exploring the effects of sparse restraints on protein structure prediction. Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and BioinformaticsProteins. 86(2):248-262.

Thutupalli S, Uppaluri S, Constable GWA, Levin SA, Stone HA, Tarnita CE, Brangwynne CP.  2017.  Farming and public goods production in Caenorhabditis elegans populations. Proceedings of the National Academy of Sciences. 114(9):2289-2294.

Mandal R, Bhuyan PJyoti, Chaudhuri P, Rao M, Dasgupta C.  2017.  Glassy swirls of active dumbbells. Physical Review E. 96(4)

Sinha V., Goyal A., Svenningsen S.L, Semsey S., Krishna S..  2017.  In silico Evolution of Lysis-Lysogeny Strategies Reproduces Observed Lysogeny Propensities in Temperate Bacteriophages. Frontiers in Microbiology. 8:1386.

Hossein S.R, Mandal R., Rao M..  2017.  {Interacting passive advective scalars in an active medium}. ArXiv e-prints.

Rupprecht J-F, Singh A, Shivashankar G.V, Rao M, Prost J.  2017.  Maximal fluctuations of confined actomyosin gels: dynamics of the cell nucleus. arXiv:1703.04395 [physics.bio-ph].

Liu G, Patch A, Bahar F, Yllanes D, Welch RD, M. Marchetti C, Thutupalli S, Shaevitz JW.  2017.  A motility-induced phase transition drives Myxococcus xanthus aggregation. arXiv:1709.06012 [physics.bio-ph].

Singh A, Rupprecht J-F, Shivashankar G.V, Prost J, Rao M.  2017.  Soft inclusion in a confined fluctuating active fluid. arXiv:1703.04401 [physics.bio-ph].

Das SG, Rao M, Iyengar G.  2017.  Universal lower bound on the free-energy cost of molecular measurements. Physical Review E. 95(6):062410-1:8.

Mandal R, Bhuyan PJyoti, Rao M, Dasgupta C.  2016.  Active fluidization in dense glassy systems. Soft Matter. 12:6268-6276.

Dey G, Thattai M, Baum B.  2016.  On the Archaeal Origins of Eukaryotes and the Challenges of Inferring Phenotype from Genotype. Trends in Cell Biology. 26:476–485.

Sachdeva H, Barma M, Rao M.  2016.  Nonequilibrium mechanisms underlying de novo biogenesis of Golgi cisternae.

Gowrishankar K, Rao M.  2016.  Nonequilibrium phase transitions, fluctuations and correlations in an active contractile polar fluid. Soft matter. 12:2040–2046.

Das A, Polley A, Rao M.  2016.  Phase segregation of passive advective particles in an active medium. Physical review letters. 116:068306.

Mascarenhas NManuel, Gosavi S.  2016.  Protein Domain-Swapping Can Be a Consequence of Functional Residues.. J Phys Chem B. 120(28):6929-38.

Lal A, Krishna S, Seshasayee ASai Narain.  2016.  Regulation of global transcription in E. coli by Rsd and 6S RNA. bioRxiv.

Mani S, Thattai M.  2016.  Stacking the odds for Golgi cisternal maturation. eLife. 5:e16231.

Thattai M.  2016.  Universal poisson statistics of mrnas with complex decay pathways. Biophysical journal. 110:301–305.

Rao VVHemanth Gi, Gosavi S.  2016.  Using the folding landscapes of proteins to understand protein function. Current opinion in structural biology. 36:67–74.

Mani S, Thattai M.  2016.  Wine glasses and hourglasses: Non-adaptive complexity of vesicle traffic in microbial eukaryotes. Molecular and biochemical parasitology.

Ramakrishnan N, Gowrishankar K, Kuttippurathu L, Kumar PB, Rao M.  2015.  Active remodeling of chromatin and implications for in-vivo folding. arXiv preprint arXiv:1510.04157.

Purkanti R, Thattai M.  2015.  Ancient dynamin segments capture early stages of host–mitochondrial integration. Proceedings of the National Academy of Sciences. 112:2800–2805.

Broom A, S Ma M, Xia K, Rafalia H, Trainor K, Colón W, Gosavi S, Meiering EM.  2015.  Designed protein reveals structural determinants of extreme kinetic stability. Proceedings of the National Academy of Sciences. 112:14605–14610.

Saha S, Lee I-H, Polley A, Groves JT, Rao M, Mayor S.  2015.  Diffusion of GPI-anchored proteins is influenced by the activity of dynamic cortical actin.. Mol Biol Cell. 26(22):4033-45.