Publications

A. Vishen S, Prost J., Rao M.  2018.  Breakdown of effective temperature, power law interactions and self-propulsion in a momentum conserving active fluid. ArXiv e-prints.

Datta V, Siddharthan R, Krishna S.  2018.  Detection Of Cooperatively Bound Transcription Factor Pairs Using ChIP-seq Peak Intensities And Expectation Maximization. bioRxiv.

Thutupalli S, Geyer D, Singh R, Adhikari R, Stone HA.  2018.  Flow-induced phase separation of active particles is controlled by boundary conditions. Proceedings of the National Academy of Sciences. 115(21):5403.

Rao V.VHemanth, Gosavi S.  2018.  On the folding of a structurally complex protein to its metastable active state. Proceedings of the National Academy of Sciences. 115(9):1998.

Mascarenhas NManuel, Terse VL, Gosavi S.  2018.  Intrinsic Disorder in a Well-Folded Globular Protein. The Journal of Physical Chemistry BThe Journal of Physical Chemistry B. 122(6):1876-1884.

Rupprecht J.-F., A. Vishen S, Shivashankar G.V, Rao M, Prost J..  2018.  Maximal Fluctuations of Confined Actomyosin Gels: Dynamics of the Cell Nucleus. Physical Review LettersPhys. Rev. Lett.. 120(9):098001-.

Krishna S, Laxman S, Lew DJ.  2018.  A minimal “push–pull” bistability model explains oscillations between quiescent and proliferative cell states. Molecular Biology of the CellMolecular Biology of the Cell. 29(19):2243-2258.

Nandi SKumar, Mandal R, Bhuyan PJyoti, Dasgupta C, Rao M, Gov NS.  2018.  A random first-order transition theory for an active glass. Proceedings of the National Academy of Sciences. 115(30):7688.

Sathe M, Muthukrishnan G, Rae J, Disanza A, Thattai M, Scita G, Parton RG, Mayor S.  2018.  Small GTPases and BAR domain proteins regulate branched actin polymerisation for clathrin and dynamin-independent endocytosis. 9(1):1835.

Gupta A., Shukla A., Srivas M., Thattai M.  2018.  SMT Solving for Vesicle Traffic Systems in Cells. ArXiv e-prints.

A. Vishen S, Rupprecht J.-F., Shivashankar G.V, Prost J., Rao M.  2018.  Soft inclusion in a confined fluctuating active gel. Physical Review EPhys. Rev. E. 97(3):032602-.

Chib S, Das S, Venkatesan S, Seshasayee ASai Narain, Thattai M.  2018.  Using stochastic cell division and death to probe minimal units of cellular replication. New Journal of Physics. 20(3):035004.

Banerjee DSankar, Munjal A, Lecuit T, Rao M.  2017.  Actomyosin pulsation and flows in an active elastomer with turnover and network remodeling. Nature Communications. 8:1121:1-13.

Thutupalli S, Geyer D, Singh R, Adhikari R, Stone H.  2017.  Boundaries determine the collective dynamics of self-propelled particles. arXiv:1710.10300 [cond-mat.soft].

Morris R, Rao M.  2017.  Covariant Active Hydrodynamics of Epithelial Tissue Morphology. arXiv:1710.09110 [cond-mat.soft].

Goyal A, Maslov S.  2017.  Diversity, stability, and reproducibility in stochastically assembled microbial ecosystems. arXiv:1711.00755 [q-bio.PE].

Taylor MJ, Husain K, Gartner ZJ, Mayor S, Vale RD.  2017.  A DNA-Based T Cell Receptor Reveals a Role for Receptor Clustering in Ligand Discrimination. Cell. 169(1):108-119.

Husain K, Rao M.  2017.  Emergent Structures in an Active Polar Fluid: Dynamics of Shape, Scattering, and Merger. Physical Review Letters. 118(7):078104-1:5.

Suratekar R, Raghu P, Krishna S.  2017.  Evidence of sinks and sources in the PLC activated PIP₂ cycle. bioRxiv.

Mandalaparthy V, Sanaboyana VRamana, Rafalia H, Gosavi S.  2017.  Exploring the effects of sparse restraints on protein structure prediction. Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and BioinformaticsProteins. 86(2):248-262.

Thutupalli S, Uppaluri S, Constable GWA, Levin SA, Stone HA, Tarnita CE, Brangwynne CP.  2017.  Farming and public goods production in Caenorhabditis elegans populations. Proceedings of the National Academy of Sciences. 114(9):2289-2294.

Mandal R, Bhuyan PJyoti, Chaudhuri P, Rao M, Dasgupta C.  2017.  Glassy swirls of active dumbbells. Physical Review E. 96(4)

Hossein S.R, Mandal R., Rao M..  2017.  {Interacting passive advective scalars in an active medium}. ArXiv e-prints.

Rupprecht J-F, Singh A, Shivashankar G.V, Rao M, Prost J.  2017.  Maximal fluctuations of confined actomyosin gels: dynamics of the cell nucleus. arXiv:1703.04395 [physics.bio-ph].

Liu G, Patch A, Bahar F, Yllanes D, Welch RD, M. Marchetti C, Thutupalli S, Shaevitz JW.  2017.  A motility-induced phase transition drives Myxococcus xanthus aggregation. arXiv:1709.06012 [physics.bio-ph].