Found 77 results
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2019. ChIPulate: A comprehensive ChIP-seq simulation pipeline. PLOS Computational Biology. 15:1-32.
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2019. Metabolic constraints drive self-organization of specialized cell groups. bioRxiv.
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2018. Breakdown of effective temperature, power law interactions and self-propulsion in a momentum conserving active fluid. ArXiv e-prints.
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2018. Detection Of Cooperatively Bound Transcription Factor Pairs Using ChIP-seq Peak Intensities And Expectation Maximization. bioRxiv.
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2018. Flow-induced phase separation of active particles is controlled by boundary conditions. Proceedings of the National Academy of Sciences. 115(21):5403.
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2018. On the folding of a structurally complex protein to its metastable active state. Proceedings of the National Academy of Sciences. 115(9):1998.
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2018. Intrinsic Disorder in a Well-Folded Globular Protein. The Journal of Physical Chemistry BThe Journal of Physical Chemistry B. 122(6):1876-1884.
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2018. Maximal Fluctuations of Confined Actomyosin Gels: Dynamics of the Cell Nucleus. Physical Review LettersPhys. Rev. Lett.. 120(9):098001-.
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2018. A minimal “push–pull” bistability model explains oscillations between quiescent and proliferative cell states. Molecular Biology of the CellMolecular Biology of the Cell. 29(19):2243-2258.
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2018. A random first-order transition theory for an active glass. Proceedings of the National Academy of Sciences. 115(30):7688.
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2018. Small GTPases and BAR domain proteins regulate branched actin polymerisation for clathrin and dynamin-independent endocytosis. 9(1):1835.
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2018. SMT Solving for Vesicle Traffic Systems in Cells. ArXiv e-prints.
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2018. Soft inclusion in a confined fluctuating active gel. Physical Review EPhys. Rev. E. 97(3):032602-.
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2018. Using stochastic cell division and death to probe minimal units of cellular replication. New Journal of Physics. 20(3):035004.
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2017. Actomyosin pulsation and flows in an active elastomer with turnover and network remodeling. Nature Communications. 8:1121:1-13.
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2017. Boundaries determine the collective dynamics of self-propelled particles. arXiv:1710.10300 [cond-mat.soft].
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2017. Covariant Active Hydrodynamics of Epithelial Tissue Morphology. arXiv:1710.09110 [cond-mat.soft].
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2017. Diversity, stability, and reproducibility in stochastically assembled microbial ecosystems. arXiv:1711.00755 [q-bio.PE].
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2017. A DNA-Based T Cell Receptor Reveals a Role for Receptor Clustering in Ligand Discrimination. Cell. 169(1):108-119.
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2017. Emergent Structures in an Active Polar Fluid: Dynamics of Shape, Scattering, and Merger. Physical Review Letters. 118(7):078104-1:5.
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2017. Evidence of sinks and sources in the PLC activated PIP<sub>2</sub> cycle. bioRxiv.
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2017. Exploring the effects of sparse restraints on protein structure prediction. Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and BioinformaticsProteins. 86(2):248-262.
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2017. Farming and public goods production in Caenorhabditis elegans populations. Proceedings of the National Academy of Sciences. 114(9):2289-2294.
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2017. Glassy swirls of active dumbbells. Physical Review E. 96(4)
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2017. In silico Evolution of Lysis-Lysogeny Strategies Reproduces Observed Lysogeny Propensities in Temperate Bacteriophages. Frontiers in Microbiology. 8:1386.